Applications

Usage:

or:

We do not have user documentation pages for all software, any software in the table that has a link will connect to our documentation. If you want to contribute towards documentation for any software, please contact us.

We do not deal with software licenses as we do not hold the budget for them; it is the PI of the research project responsibility to have the right budget for the software that is needed. Any unusual information about licenses or how to set up a license on the ARC system is in a web page linked to from this table. Information on open source licenses and their conditions of use are available from http://opensource.org/licenses.

Applications

This table of applications was automatically created Wed Oct 4 13:07:14 2017
Module Version(s) 3 2 M1 Description
abaqus 6.13 Y Unified finite element analysis
6.14 Y
amber 12 Y Molecular dynamics simulation
14 Y Y Y
16 Y
16gpu Y
ampl 12.6.1.0 Y Y solver
ansys 14.5.7 Y Finite element methods
15.0.5 Y
16.1.1 Y
16.2 Y
17.0 Y
17.1 Y Y
17.2 Y Y
18.1 Y Y
ansysem 15.0 Y ANSYS Electromagnetics Suite
17.1 Y Y
17.2 Y Y
18.1 Y Y
autodock 1.1.2 Y molecular docking sim
bwa 0.7.6a Y Sequence alignment tool
castep 16.11 Y Models materials using density functional theory
6.1.1 Y
7.0.1 Y
cdo 1.6.1 Y Climate Data Operators
comsol 4.4 Y Multiphysics simulation software environment
5.1 Y
5.2 Y Y
5.2a Y Y
5.3 Y Y
cp2k 2.6.1 Y Molecular dynamics simulations.
dl_poly 4.05 Y Molecular dynamics simulation
4.08 Y Y
ehits 12.0 Y Molecular docking and virtual screening
14.0.3 Y
fcm 2015.10.0 Y Code management for UM
2017.02.0 Y
ferret 6.8.5 Y Data Visualization and Analysis
flow3d 11.1 Y CFD environment
gate 6.2 Y Numerical simulations in medical imaging
gaussian G09 Y Electronic structure modeling
G09.D01 Y Y Y
geant4 10.0 Y particle simulation toolkit
9.5 Y
9.6 Y
glpk 4.55 Y solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.
gnuplot 4.6.4 Y Plotting tool
gpaw 0.10.0.11364 Y density-functional theory (DFT) Python code
0.11.0.13004 Y
grace 5.1.23 Y Y Plotting tool
gromacs 4.5.6 Y Molecular dynamics package
4.6.5 Y
5.0.2 Y Y Y
h5utils 1.12.1 Y Convert HDF5 datasets into images, VTK format
1.13 Y
idl 7.0 Y Data analysis, visualization and software development
8.4 Y
8.5 Y
8.6 Y
lammps 17Nov16 Y Y Classical molecular dynamics
1Feb14 Y
liggghts 3.4.1 Y solver
3.5.0 Y
3.6.0 Y Y
lpp 1.0 Y Plotting tool
matlab R2012a Y A high-level technical computing language
R2016a Y Y Y
meep 1.3 Y FDTD simulation package for em systems
mesmer 4.0 Y Master Equation Solver for Multi Energy well Reactions
molpro 2010.1.34 Y Y Molecular dynamics package
mpas 4.0 Y Weather model
mpb 1.5 Y Band structures of periodic dielectrics
mro 3.2.3 Y Statistical computing and graphics
namd 2.12 Y Y Molecular dynamics of biomolecular systems
2.9 Y
nbo 6 Y Natural Bond Orbitals
ncl 6.1.2 Y NCAR Command Language
nco 4.3.7 Y Y netCDF Operator – netCDF file manipulation tools
ncview 2.1.2 Y Visual browser for netCDF files
nwchem 6.5 Y Computational chemistry
octave 3.8.2 Y High-level interpreted language, similar to Matlab
openeye 3.0.1 Y Molecular docking tool
3.2 Y Y
openfoam 2.1.1 Y CFD software package
2.3.0 Y
2.3.0-new Y
2.4.0 Y
3.0.0 Y
3.0.1 Y Y
4.1.0 Y Y
v1606+ Y
v1612+ Y Y
orca 3.0.3 Y An ab initio, DFT and semiempirical SCF-MO package
4.0.0 Y
paraview 4.0.1 Y Data analysis and visualisation
4.3.1 Y Y
5.1.2 Y Y
5.3.0 Y
paraview-osmesa 4.4.0 Y Y Data analysis and visualisation (CPU rendering)
5.3.0 Y
ploticus 2.41 Y Plotting tool
qhull 2012.1 Y computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram.
qiime 1.8.0 Y Y Quantitative insights into microbial ecology
R 2.15.3 Y Statistical computing and graphics
3.0.2 Y Y
3.1.0 Y
3.2.0 Y Y
3.2.2 Y
3.2.3 Y
3.3.2 Y
3.4.0 Y Y
relion 1.2 Y Y cryo-EM refinement tool.
1.3 Y Y
1.4 Y
rstudio 0.98.1103 Y GUI for R
samtools 1.1 Y Sequencing tool
schrodinger 2016-3 Y Docking tool
starccm 11.04.012 Y Y CFD solver
9.06 Y
stata 13.1 Y Statistical software
14 Y
15 Y Y Y
stir 2.4 Y Tomographic imaging
visit 2.12.1 Y Parallel visualisation and graphical analysis tool
2.6.3 Y
2.9.2 Y Y
vmd 1.9.1 Y Molecular visualisation program
1.9.3 Y Y