ARC2 Modules

This listing was created from the module avail command on Friday the 10th of March 2017.

Infrastructure

Module Version(s) Description
allinea 4.2.1-38435 Allinea DDT/MAP – serial/parallel debugging/profiling
bazaar 2.7.0 Distributed version control system
cmake 2.8.11.2 Cross-platform build system
2.8.12.2
3.2.3
3.7.2
dmtcp 2.3.1 Distributed MultiThreaded CheckPointing
doxygen 1.8.8 Cross-platform build system
licenses Default licenses
maven 3.1.1 Apache Mavenproject management tool for Java
sge SGE batch system
system System utility modules
test Adds the test module paths
user Default environment settings

Architecture

Module Version(s) Description
bit 64 Select 64-bit compiler and library module flavours

Compilers

Module Version(s) Description
ghc 6.8.3 Glasgow Haskell Compiler
7.8.2
ghc-eden 7.8.2 Glasgow Haskell Compiler
gnu 4.8.1 OS-supplied GNU GCC compiler suite
4.9.1
5.3.0
native
intel 13.1.3.192(default) Intel compiler suite
15.0.0
16.0.2
java 7u45 Oracle Java SDK
8u66
llvm 3.4.2 Modular and reusable compiler and toolchain technologies
pgi 13.6 Portland Group (PGI) compiler suite
python 2.7.6(default) Programming language
3.3.2
3.3.6
native
yasm 1.2.0 Rewrite of NASM assembler

Libraries

Module Version(s) Description
acml 5.3.1 AMD Core Math Libraries (optimised BLAS, LAPACK, etc.)
armadillo 3.810.2 C++ linear algebra library
arpack-ng 3.1.5 ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems
atlas 3.10.1 Optimised BLAS and LAPACK libraries (inc. LAPACK 3.4.2)
boost 1.54.0 Peer-reviewed portable C++ source libraries
1.62.0
clhep 2.1.1 CERN class library for HEP
2.1.4
cube 4.2.3 Cube C-writer, C++ reader, tools and GUI
4.3.1
darshan 2.3.0 HPC I/O characterisation tool
dimemas 5.2.11 Message passing simulator
dyninst 8.1.2 API for program binary analysis and instrumentation
8.2.1
eigen 3.2.2 C++ linear algebra library
extrae 3.0.1 Generate paraver trace files
ffmpeg 2.0.2 Audio and video codec libraries
3.2.1
fftw 2.1.5 Discrete Fourier Transform library
3.3.3
3.3.4
gdal 1.11.0 Translator library for geospatial data formats
geos 3.4.2 C++ port of Java Topology Suite (JTS)
gsl 1.15 GNU Scientific Library
hdf5 1.8.11 File format for storing and managing data
1.8.12
hdf-java 2.9 HDFView, Java HDF Object, and Java HDF4 and HDF5
hpctoolkit 5.3.2-r4695 Suite of tools for measurement and analysis of program performance
hypre 2.10.0b Parallel sparse linear equation solver
2.9.0b
intelmpi 4.1.1.036(default) Intel MPI 2.2 library
5.1.0.038
ipm 2.0.3_20140417 Intel MPI 2.2 library
itac 8.0.3.007 Intel Trace Analyser and Collector
libdwarf 20150115 Debugging Information Format library
libtiff 4.0.6 TIFF library with bigtiff support
libunwind 1.1 Examine/manipulate program call-chain
libx264 20161130-2245 Library and application for encoding video to H.264/MPEG-4 AVC
libxmlplusplus 2.34.2 C++ wrapper for libxml2
mkl 11.0u5 Intel Math Kernel Library (optimised BLAS, LAPACK, etc.)
11.2
11.3u2
mpe2 1.3.0 MPI program profiler
mpiP 3.4.1 Lightweight MPI profiling library
mvapich2 1.9(default) Lightweight MPI profiling library
netcdf 4.3.0 NetCDF library (inc. pnetcdf 1.3.1 and hdf5 1.8.11)
ompP 0.8.5 OpenMP application profiling tool
opencv 2.4.6 Realtime computer vision library
openmpi 1.6.5(default) Realtime computer vision library
openslide 3.3.3 Whole-slide image C library
openspeedshop 2.1-u7 Application performance analysis
osmesa 10.6.9 Off-screen OpenGL implementation (no X required)
otf2 1.2.1 MPI Open Trace Format 2
1.5.1
papi 4.4.0 Performance Application Programming Interface
5.4.0
paraver 4.5.5 MPI trace analyser
pdt 3.20 Program Database Toolkit
petsc 3.3-p7 Parallel partial differential equations solver
3.4.3
pgplot 5.2.2 Device-independent graphics library
proj 4.8.0 Cartographic Projections Library
python-libs 2.0.0 Python modules for numerical work
2.1.0
2.2.0
2.3.0
2.4.0(default)
qrupdate 1.1.2 A LIBRARY FOR FAST UPDATING OF QR AND CHOLESKY DECOMPOSITIONS
qt 4.8.6 Cross-platform application and UI framework
5.6.1
root 5.34.05 CERN C++ data processing framework
5.34.23
6.08.02
scalasca 2.2.1 Measuring and analysing parallel runtime behaviour
scorep 1.3 Score-P measurement infrastructure
1.4.1
silo 4.10.2(default) Mesh and Field I/O Library and Scientific Database
4.9.1
suitesparse 4.2.1 Sparse matrix software (UMFPACK, CHOLMOD, etc.)
tau 2.24 Tuning and Analysis Utilities
udunits 2.2.17 C library for manipulation of physical units
valgrind 3.10.1 Program analysis tools
vtk 6.0.0 Visualization Toolkit

Applications

Module Version(s) Description
abaqus 6.13 Unified finite element analysis
6.14
amber 12(default) Molecular dynamics simulation
14
ampl 12.6.1.0 solver
ansys 14.5.7 Finite element methods
15.0.5
16.1.1
16.2(default)
17.0
17.1
ansysem 15.0 ANSYS Electromagnetics Suite
17.1
autodock 1.1.2 molecular docking sim
bwa 0.7.6a Sequence alignment tool
castep 16.11 Models materials using density functional theory
6.1.1
7.0.1
cdo 1.6.1 Climate Data Operators
comsol 4.4 Multiphysics simulation software environment
5.1
5.2
5.2a
cp2k 2.6.1 Molecular dynamics simulations.
dl_poly 4.05 Molecular dynamics simulations.
ehits 12.0 Molecular docking and virtual screening
14.0.3
fcm 2015.10.0 Code management for UM
ferret 6.8.5 Data Visualization and Analysis
gate 6.2 Numerical simulations in medical imaging
gaussian G09 Electronic structure modeling
G09.D01
geant4 10.0 particle simulation toolkit
9.5
9.6
glpk 4.55 solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.
gnuplot 4.6.4 Plotting tool
gpaw 0.10.0.11364 density-functional theory (DFT) Python code
0.11.0.13004
grace 5.1.23 Plotting tool
gromacs 4.5.6 Molecular dynamics package
4.6.5
5.0.2
h5utils 1.12.1 Convert HDF5 datasets into images, VTK format
idl 7.0 Data analysis, visualization and software development
8.4
lammps 1Feb14 Classical molecular dynamics
liggghts 3.4.1 solver
3.5.0
lpp 1.0 Plotting tool
matlab R2012a A high-level technical computing language
R2016a
mesmer 4.0 Master Equation Solver for Multi Energy well Reactions
molpro 2010.1.34 Molecular dynamics package
mpas 4.0 Weather model
namd 2.9 Molecular dynamics of biomolecular systems
nbo 6 Natural Bond Orbitals
ncl 6.1.2 NCAR Command Language
nco 4.3.7 netCDF Operator – netCDF file manipulation tools
ncview 2.1.2 Visual browser for netCDF files
nwchem 6.5 Computational chemistry
octave 3.8.2 High-level interpreted language, similar to Matlab
openeye 3.0.1 Molecular docking tool
3.2
openfoam 2.1.1 CFD software package
2.3.0(default)
2.3.0-new
2.4.0
3.0.0
3.0.1
4.1.0
v1606+
v1612+
paraview 4.0.1 Data analysis and visualisation
4.3.1
5.1.2
paraview-osmesa 4.4.0 Data analysis and visualisation (CPU rendering)
ploticus 2.41 Plotting tool
qhull 2012.1 computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram.
qiime 1.8.0 Quantitative insights into microbial ecology
R 2.15.3 Statistical computing and graphics
3.0.2
3.1.0
3.2.0
3.2.2
relion 1.2 cryo-EM refinement tool.
1.3
1.4
samtools 1.1 Sequencing tool
schrodinger 2016-3 Docking tool
starccm 11.04.012 CFD solver
9.06
stata 13.1 Statistical software
stir 2.4 Tomographic imaging
visit 2.6.3 Parallel visualisation and graphical analysis tool
2.9.2
vmd 1.9.1 Molecular visualisation program