ARC3 Modules

This listing was created from the module avail command on Wednesday the 6th of September 2017.

Infrastructure

Infrastructure

Module Version(s) Description
advisor 2017.1.1.486553 Vector optimisation prototyping
allinea 7.0 Allinea Forge – DDT/MAP debugging/profiling
cmake 3.2.3 Cross-platform build system
3.7.2
inspector 2017.1.1.484836 Vector optimisation prototyping
licenses Default licenses
sge SGE batch system
singularity 2.2 Image based container software
2.2.1
2.3.1
system System utility modules
test Adds the test module paths
user Default environment settings
vtune 2017.1.0.486011 Performance analysis tool for serial/multithreaded programs

Architecture

Module Version(s) Description

Compilers

Module Version(s) Description
cuda 8.0.44 CUDA development environment for NVIDIA GPUs
8.0.61
gnu 6.3.0(default) GNU GCC compiler suite
native
intel 16.0.2 Intel compiler suite
17.0.1(default)
java 8u121 Oracle Java SDK
llvm 3.9.1 Modular and reusable compiler and toolchain technologies
pgi 16.9(default) Modular and reusable compiler and toolchain technologies
python 2.7.13 Programming language
3.6.0(default)
native
yasm 1.2.0 Rewrite of NASM assembler

Libraries

Module Version(s) Description
atlas 3.10.3 Optimised BLAS and LAPACK libraries (inc. LAPACK 3.6.1)
boost 1.60.0 Peer-reviewed portable C++ source libraries
1.63.0
cube 4.3.4 Cube C-writer, C++ reader, tools and GUI
darshan 3.1.3 HPC I/O characterisation tool
dyninst 8.1.2 API for program binary analysis and instrumentation
9.3.1
extrae 3.4.3 Generate paraver trace files
ffmpeg 3.2.1 Audio and video codec libraries
fftw 2.1.5 Discrete Fourier Transform library
3.3.6-pl1
glpk 4.62 GNU Linear Programming Kit
gsl 1.15 GNU Scientific Library
hdf5 1.8.17 File format for storing and managing data
hpctoolkit 2016.12 Suite of tools for measurement and analysis of program performance
hypre 2.11.2 Parallel sparse linear equation solver
intelmpi 2017.1.132 Intel MPI 3.0 library
libdwarf 20161124 Debugging Information Format library
libx264 20161130-2245 Library and application for encoding video to H.264/MPEG-4 AVC
mkl 11.3u2 Intel Math Kernel Library (optimised BLAS, LAPACK, etc.)
2017.1(default)
mpe2 2.4.9b MPI program profiler
mpiP 3.4.1 Lightweight MPI profiling library
must 1.5 MPI program profiler
mvapich2 2.2 MPI 3.0 library (MPICH for InfiniBand)
netcdf 4.4.1 NetCDF library (inc. pnetcdf 1.6.1 and hdf5 1.8.17)
ompP 0.8.5 OpenMP application profiling tool
openmpi 2.0.2(default) OpenMP application profiling tool
openspeedshop 2.3 Application performance analysis
osmesa 13.0.4 Off-screen OpenGL implementation (no X required)
17.0.1
otf2 2.0 MPI Open Trace Format 2
papi 5.5.1 Performance Application Programming Interface
paraver 4.6.3 Extrae data analyser
pdt 3.23 Program Database Toolkit
petsc 3.4.5 Parallel partial differential equations solver
pgplot 5.2.2 Device-independent graphics library
python-libs 3.0.0 Python modules for numerical work
3.0.1(default)
qt 4.8.6 Cross-platform application and UI framework
root 6.08.02 CERN C++ data processing framework
scalasca 2.3.1 Measuring and analysing parallel runtime behaviour
scorep 3.0 Score-P measurement infrastructure
silo 4.10.2 Mesh and Field I/O Library and Scientific Database
4.9.1
suitesparse 4.5.4 Sparse matrix software (UMFPACK, CHOLMOD, etc.)
tau 2.26 Tuning and Analysis Utilities
valgrind 3.12.0 Program analysis tools
vtk 7.1.0 Visualization Toolkit

Applications

Module Version(s) Description
amber 14 Molecular dynamics simulation
16(default)
16gpu
ampl 12.6.1.0 solver
ansys 17.1 Finite element methods
17.2
ansysem 17.1 ANSYS Electromagnetics Suite
17.2
comsol 5.2 Multiphysics simulation software environment
5.2a
5.3
dl_poly 4.08 Multiphysics simulation software environment
fcm 2017.02.0 Code management for UM
gaussian G09.D01 Electronic structure modeling
gromacs 5.0.2 Molecular dynamics package
h5utils 1.13 Convert HDF5 datasets into images, VTK format
idl 8.5 Data analysis, visualization and software development
8.6
lammps 17Nov16 Classical molecular dynamics
liggghts 3.6.0 solver
matlab R2016a A high-level technical computing language
meep 1.3 FDTD simulation package for em systems
molpro 2010.1.34 Molecular dynamics package
mpb 1.5 Band structures of periodic dielectrics
namd 2.12 Molecular dynamics of biomolecular systems
openeye 3.2 Molecular docking tool
openfoam 3.0.1 CFD software package
4.1.0
v1612+
orca 4.0.0 An ab initio, DFT and semiempirical SCF-MO package
paraview 5.3.0 Data analysis and visualisation
paraview-osmesa 5.3.0 Data analysis and visualisation (CPU rendering)
R 3.3.2 Statistical computing and graphics
starccm 11.04.012 CFD solver
stata 15 Statistical software
visit 2.12.1 Parallel visualisation and graphical analysis tool
vmd 1.9.3 Molecular visualisation program