Category: Training

The Carpentries and Research Computing

I’m pleased to announce that we’ve renewed our membership of The Carpentries for another year.

For those of you that don’t know what ‘The Carpentries’ are, they (we) are an international organisation of volunteer instructors, trainers, organisations and staff who develop curricula and teach coding and data science skills to researchers worldwide.

We’re pleased to be able to support the aims of the Carpentries and in conjunction with other UK partner organisations (and especially our friends at the Software Sustainability Institute ) help the wider UK research community develop their skills.

Here at Leeds, we organise and run two and three-day workshops as part of our training programme. We have a new group of instructors on board, so do keep an eye on the training calendar for upcoming workshops. We run workshops using R, Python and occasionally Matlab.

In conjunction with out colleagues at the University of Huddersfield, we’ve also attracted some BBSRC STARS to run another set of workshops. You’ll find more information about this at the Next Generation Biologists website.

In previous years we have run a number of workshops in conjunction with our colleagues in the School of Earth and Environment funded by a number of NERC ATSC awards.

If you’re interested in finding out more, perhaps to be a helper at a workshop, a future instructor or you’d like to find out more about the content of a typical workshop then please get in touch.

Programming for Evolutionary Biology conference

I thought I’d update you on a conference I’m presenting at in September.  It’s Programming for Evolutionary Biology 2018, taking place in Buttermere in the beautiful Lake District from September 2-6th 2018.

It’s organised by our colleagues (and BBSRC STARS partners) at the University of Huddersfield, Jarek Bryk (@jarekbryk), Maria Luisa Martin Cerezo and Marina Soares da Silva.

PEB’s aim is to bring together scientists broadly interested in applying bioinformatic tools to answer evolutionary and ecological questions.

Unlike other conferences featuring mostly talks and poster sessions, it aims to serve as a platform for discussing common programming pitfalls encountered during research and features workshops to further develop participants’ bioinformatic skills.

It’s a fantastic programme, please check it out.  The organisers are still able to accept applications, so if you are interested then get in touch.

My session is on Cloud Computing.  We’ll be looking at how to use Cloud services for genomics analyses, including setting up our own server in the Cloud, how to store and manage our data and an introduction to the Cloud Genomics services: Microsoft Genomics and Google Genomics.