Usage:

```
module add
```

or:

```
module add
```/

We do not have user documentation pages for all software, any software in the table that has a link will connect to our documentation. If you want to contribute towards documentation for any software, please contact us.

We do not deal with software licenses as we do not hold the budget for them; it is the PI of the research project responsibility to have the right budget for the software that is needed. Any unusual information about licenses or how to set up a license on the ARC system is in a web page linked to from this table. Information on open source licenses and their conditions of use are available from http://opensource.org/licenses.

## Applications

Module | Version(s) | 3 | 2 | M1 | Description |
---|---|---|---|---|---|

abaqus | 6.13 | Y | Unified finite element analysis | ||

6.14 | Y | ||||

amber | 12 | Y | Molecular dynamics simulation | ||

14 | Y | Y | Y | ||

16 | Y | ||||

16gpu | Y | ||||

ampl | 12.6.1.0 | Y | Y | solver | |

ansys | 14.5.7 | Y | Finite element methods | ||

15.0.5 | Y | ||||

16.1.1 | Y | ||||

16.2 | Y | ||||

17.0 | Y | ||||

17.1 | Y | Y | |||

17.2 | Y | Y | |||

18.1 | Y | Y | |||

ansysem | 15.0 | Y | ANSYS Electromagnetics Suite | ||

17.1 | Y | Y | |||

17.2 | Y | Y | |||

18.1 | Y | Y | |||

autodock | 1.1.2 | Y | molecular docking sim | ||

bwa | 0.7.6a | Y | Sequence alignment tool | ||

castep | 16.11 | Y | Models materials using density functional theory | ||

6.1.1 | Y | ||||

7.0.1 | Y | ||||

cdo | 1.6.1 | Y | Climate Data Operators | ||

comsol | 4.4 | Y | Multiphysics simulation software environment | ||

5.1 | Y | ||||

5.2 | Y | Y | |||

5.2a | Y | Y | |||

5.3 | Y | Y | |||

cp2k | 2.6.1 | Y | Molecular dynamics simulations. | ||

dl_poly | 4.05 | Y | Molecular dynamics simulation | ||

4.08 | Y | Y | |||

ehits | 12.0 | Y | Molecular docking and virtual screening | ||

14.0.3 | Y | ||||

fcm | 2015.10.0 | Y | Code management for UM | ||

2017.02.0 | Y | ||||

ferret | 6.8.5 | Y | Data Visualization and Analysis | ||

flow3d | 11.1 | Y | CFD environment | ||

gate | 6.2 | Y | Numerical simulations in medical imaging | ||

gaussian | G09 | Y | Electronic structure modeling | ||

G09.D01 | Y | Y | Y | ||

geant4 | 10.0 | Y | particle simulation toolkit | ||

9.5 | Y | ||||

9.6 | Y | ||||

glpk | 4.55 | Y | solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library. | ||

gnuplot | 4.6.4 | Y | Plotting tool | ||

gpaw | 0.10.0.11364 | Y | density-functional theory (DFT) Python code | ||

0.11.0.13004 | Y | ||||

grace | 5.1.23 | Y | Y | Plotting tool | |

gromacs | 4.5.6 | Y | Molecular dynamics package | ||

4.6.5 | Y | ||||

5.0.2 | Y | Y | Y | ||

h5utils | 1.12.1 | Y | Convert HDF5 datasets into images, VTK format | ||

1.13 | Y | ||||

idl | 7.0 | Y | Data analysis, visualization and software development | ||

8.4 | Y | ||||

8.5 | Y | ||||

8.6 | Y | ||||

lammps | 17Nov16 | Y | Y | Classical molecular dynamics | |

1Feb14 | Y | ||||

liggghts | 3.4.1 | Y | solver | ||

3.5.0 | Y | ||||

3.6.0 | Y | Y | |||

lpp | 1.0 | Y | Plotting tool | ||

matlab | R2012a | Y | A high-level technical computing language | ||

R2016a | Y | Y | Y | ||

meep | 1.3 | Y | FDTD simulation package for em systems | ||

mesmer | 4.0 | Y | Master Equation Solver for Multi Energy well Reactions | ||

molpro | 2010.1.34 | Y | Y | Molecular dynamics package | |

mpas | 4.0 | Y | Weather model | ||

mpb | 1.5 | Y | Band structures of periodic dielectrics | ||

mro | 3.2.3 | Y | Statistical computing and graphics | ||

namd | 2.12 | Y | Y | Molecular dynamics of biomolecular systems | |

2.9 | Y | ||||

nbo | 6 | Y | Natural Bond Orbitals | ||

ncl | 6.1.2 | Y | NCAR Command Language | ||

nco | 4.3.7 | Y | Y | netCDF Operator – netCDF file manipulation tools | |

ncview | 2.1.2 | Y | Visual browser for netCDF files | ||

nwchem | 6.5 | Y | Computational chemistry | ||

octave | 3.8.2 | Y | High-level interpreted language, similar to Matlab | ||

openeye | 3.0.1 | Y | Molecular docking tool | ||

3.2 | Y | Y | |||

openfoam | 2.1.1 | Y | CFD software package | ||

2.3.0 | Y | ||||

2.3.0-new | Y | ||||

2.4.0 | Y | ||||

3.0.0 | Y | ||||

3.0.1 | Y | Y | |||

4.1.0 | Y | Y | |||

v1606+ | Y | ||||

v1612+ | Y | Y | |||

orca | 3.0.3 | Y | An ab initio, DFT and semiempirical SCF-MO package | ||

4.0.0 | Y | ||||

paraview | 4.0.1 | Y | Data analysis and visualisation | ||

4.3.1 | Y | Y | |||

5.1.2 | Y | Y | |||

5.3.0 | Y | ||||

paraview-osmesa | 4.4.0 | Y | Y | Data analysis and visualisation (CPU rendering) | |

5.3.0 | Y | ||||

ploticus | 2.41 | Y | Plotting tool | ||

qhull | 2012.1 | Y | computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. | ||

qiime | 1.8.0 | Y | Y | Quantitative insights into microbial ecology | |

R | 2.15.3 | Y | Statistical computing and graphics | ||

3.0.2 | Y | Y | |||

3.1.0 | Y | ||||

3.2.0 | Y | Y | |||

3.2.2 | Y | ||||

3.2.3 | Y | ||||

3.3.2 | Y | ||||

3.4.0 | Y | Y | |||

relion | 1.2 | Y | Y | cryo-EM refinement tool. | |

1.3 | Y | Y | |||

1.4 | Y | ||||

rstudio | 0.98.1103 | Y | GUI for R | ||

samtools | 1.1 | Y | Sequencing tool | ||

schrodinger | 2016-3 | Y | Docking tool | ||

starccm | 11.04.012 | Y | Y | CFD solver | |

9.06 | Y | ||||

stata | 13.1 | Y | Statistical software | ||

14 | Y | ||||

15 | Y | Y | Y | ||

stir | 2.4 | Y | Tomographic imaging | ||

visit | 2.12.1 | Y | Parallel visualisation and graphical analysis tool | ||

2.6.3 | Y | ||||

2.9.2 | Y | Y | |||

vmd | 1.9.1 | Y | Molecular visualisation program | ||

1.9.3 | Y | Y |